Bioinformatics Publications

Next-generation Sequence Alignment

• Hongyi Xin, Donghyuk Lee, Farhad Hormozdiari, Can Alkan, and Onur Mutlu,
  "FastHASH: A New GPU-friendly Algorithm for Fast and Comprehensive Next-generation Sequence Mapping"
  Pacific Symposium on Biocomputing (PSB) Poster Session, Hawaii, January 2012. Poster (pdf) Abstract (pdf) Slides (pdf)
• Can Alkan, Jeffrey M. Kidd, Tomas Marques-Bonet, Gozde Aksay, Francesca Antonacci, Fereydoun Hormozdiari, Jacob O. Kitzman, Carl Baker, Maika Malig, Onur Mutlu, S. Cenk Sahinalp, Richard A. Gibbs, and Evan E. Eichler,
  "Personalized copy number and segmental duplication maps using next-generation sequencing"
  Nature Genetics, August 30, [Epub ahead of print], Vol. 41, No. 10, pages 1061-1067, October 2009.