SeqPair.h

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/**************************************************************************
***    
*** Copyright (c) 1995-2000 Regents of the University of California,
***               Andrew E. Caldwell, Andrew B. Kahng and Igor L. Markov
*** Copyright (c) 2000-2004 Regents of the University of Michigan,
***               Saurabh N. Adya, Jarrod A. Roy and Igor L. Markov
***
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#ifndef SEQPAIR_H
#define SEQPAIR_H

#include <fstream>
#include <vector>
#include <algorithm>
#include <math.h>
#include <stdlib.h>

namespace parquetfp
{
   class SeqPair
   {
   private:
      vector<unsigned> _XX;         //seqPair in the X direction
      vector<unsigned> _YY;         //seqPair in the Y direction

   public:
      // empty sequence-pair
      SeqPair(){}

      // random sequence-pair of length "size"
      SeqPair(unsigned size);

      // sequence-pair (X, Y)
      SeqPair(const vector<unsigned>& X, const vector<unsigned>& Y);

      inline const vector<unsigned>& getX() const;
      inline const vector<unsigned>& getY() const;
  
      inline void putX(const vector<unsigned>& X);
      inline void putY(const vector<unsigned>& Y);

      inline void printX(void) const;
      inline void printY(void) const;

      inline unsigned getSize(void) const;
   };

   // -----IMPLEMENTATIONS-----
   const vector<unsigned>& SeqPair::getX(void) const
   {   return _XX; }

   const vector<unsigned>& SeqPair::getY(void) const
   {   return _YY; }

   void SeqPair::putX(const vector<unsigned>& X)
   { _XX = X; }

   void SeqPair::putY(const vector<unsigned>& Y)
   { _YY = Y; }

   unsigned SeqPair::getSize(void) const
   {  return _XX.size(); }

   void SeqPair::printX(void) const
   {
      cout<<"X Seq Pair"<<endl;
      for(unsigned i=0; i<_XX.size(); ++i)
      {
         cout<<_XX[i]<<" ";
      }
      cout<<endl;
   }

   void SeqPair::printY(void) const
   {
      cout<<"Y Seq Pair"<<endl;
      for(unsigned i=0; i<_XX.size(); ++i)
      {
         cout<<_YY[i]<<" ";
      }
      cout<<endl;
   }
}
//using namespace parquetfp;

#endif

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